Publications

Asterisk (*) denotes supervised students, postdoctoral researchers, or technicians.

Under Review / In Revision

Kim, H. H., Wolfe, W., Lawrence, E., Doney, S., Moran, M. A., Freilich, M., Krinos, A., Yang, M., Covert, M., Braakman, R., Scott, H., Segrè, D., Litchman, E., Weissman, J. L., and Agmon, E. Scalable, substrate-explicit metabolic network modeling of heterotrophic bacteria for ocean biogeochemistry. In Prep., Invited Perspective, Proceedings of the National Academy of Sciences.

*Connors, E. J., Waite, N., *Chamberlain, E. J., Stammerjohn, S., Goodell, E., Eveleth, R., Dierssen, H., Munro, D., Turner, T., Bowman, J., Schofield, O., and Kim, H. H. Unveiling drivers of Antarctic primary production using machine learning. Under Review, Geophysical Research Letters.

Murray, C. S., Marx, L., Aluru, N., Wang, Z. W., Chen, K., Kim, H. H., Michel, A., McCorkle, D. C., Rheuban, J. E., and Suhbas, A. The effects of elevated seawater pH and total alkalinity following dosing of sodium hydroxide in Calanus finmarchicus. Under Review. ICES Journal of Marine Science [preprint]. https://doi.org/10.64898/2026.02.03.700700 

Kenney, M. A., Kopp, R., Samaras, C., and U.S. Climate Assessment Scientists (incl. Kim, H. H.). What a robust, evidence-based United States climate assessment needs. Under Review, Earth’s Future. – From National Climate Assessment 6 effort; Invited by AGU/AMS for special collection “U.S. Climate Collection: Informing Assessment of Risks and Solutions."

*Chamberlain, E. J., Boulton, W., *Connors, E. J., *Calianos, T., Bowman, J., Creamean, J., Mock, T., and Kim, H. H. Machine learning as a decoder from microbial diversity to microbial function. Under Review, Frontiers in Microbiology [preprint]. https://www.biorxiv.org/content/10.1101/2025.10.30.685628v1

Czajka, C. R., Turner, J. S., Stammerjohn, S., Kim, H. H., Schofield, O., Saenz, B. T., and Doney, S. C. Modeling upper ocean ecosystem dynamics in response to interannual sea-ice variability in the Western Antarctic Peninsula. Under Review, Journal of Geophysical Research: Biogeosciences.

Subhas, A. V., Rheuban, J. E., Kostel, K., Marx, L., Morkeski, K., Hayden, M. G., Lanagan, T., Dean, C., Burkitt-Gray, M., *Guo, Y., McCorkle, D. C., Murray, C. S., Wang, Z. A., Michel, A. P. M., Kim, H. H., Chen, K., Yager, J. A., Collins, J., Cape, M., Martin, E., Kleisner, K., and Mason, J. G. Field notes on public communication and engagement for the LOC-NESS Ocean Alkalinity Enhancement field trial. Under Review, ICES Journal of Marine Science, “Stories from the Front Lines”.

Marx, L., Rheuban, J., McCorkle, D., Murray, C., *Guo, Y., Wang, Z. A., Michel, A., Chen, K., Kim, H. H., and Subhas, A. Development of the ecological activity index as an integrative ecosystem assessment and monitoring asset for ocean alkalinity enhancement. Under Review, Nature Portfolio [preprint]. https://doi.org/10.21203/rs.3.rs-6371725/v1

2025

Kim, H. H., *Mao, S., Archibald, K. M., *Terhaar, J., and *Thomason, R. M. (2025). Bacterial control of metabolic balance in the Sargasso Sea near Bermuda: Insights from data-assimilative biogeochemical modeling. Journal of Geophysical Research: Biogeosciences, 130, e2025JG008919. https://doi.org/10.1029/2025JG008919

*Guo, Y., Chen, K., Subhas, A. V., Rheuban, J. E., Wang, Z. A., McCorkle, D. C., Michel, A., and Kim, H. H. (2025). Site selection for ocean alkalinity enhancement informed by passive tracer simulations. Communications Earth & Environment, 6, 535. https://doi.org/10.1038/s43247-025-02480-1

Collins, J. R., Cape, M. R., Boenish, R. E., Benitez-Nelson, C. R., Doney, S. C., Fujita, R., Gaines, S. D., Gruby, R. L., Jin, D., Kim, H. H., Kleisner, K. M., Mariani, G., Moore, L. A., Pershing, A. J., Rader, D. N., Roman, J., Saba, G. K., Sanchirico, J. N., Saul, S., Savoca, M. S., and A. Waller (2025). The biogeochemistry of natural climate solutions based on fish, fisheries, and marine mammals: A review of current evidence, research needs, and critical assessment of readiness. Global Biogeochemical Cycles, 39(7), e2024GB008393. https://doi.org/10.1029/2024GB008393

Turner, J. S., Munro, M., Fay, A. R., Stammerjohn, S., Kim, H. H., Schofield, O., and Dierssen, H. (2025). Seasonal variability of surface ocean carbon uptake and chlorophyll-a concentration in the West Antarctic Peninsula over two decades. Geophysical Research Letters, 52, e2024GL112446, https://doi.org/10.1029/2024GL112446

2024

Tegler, L. A., Horner, T. J., Galy, V., Bent, S. M., Wang, Y., Kim, H. H., Mete, Ö. Z., and Nielsen, S. G. (2024). Distribution and drivers of organic carbon sedimentation along the continental margins. AGU Advances, 5(4), e2023AV001000, https://doi.org/10.1029/2023AV001000

Turner, J. S., Dierssen, H., Schofield, O., Kim, H. H., Stammerjohn, S., Munro, D. R., and Kavanaugh, M. (2024). Changing phytoplankton phenology in the marginal ice zone west of the Antarctic Peninsula. Marine Ecology Progress Series, 734, 1-21, https://doi.org/10.3354/meps14567

2023

Mete, Ö. Z., Subhas, A. V., Kim, H. H., Dunlea, A. G., Whitmore, L. M., Shiller, A. M., Gilbert, M., Leavitt, W. D., and Horner, T. J. (2023). Barium in seawater: dissolved distribution, relationship to silicon, and barite saturation state determined using machine learning. Earth System Science Data, 15, 4023-4045, https://doi.org/10.5194/essd-15-4023-2023

Kim, H. H., Laufkötter, C., Lovato, T., Doney, S. C., and Ducklow, H. W. (2023). Projected 21st-century changes in marine heterotrophic bacteria under climate change. Frontiers in Microbiology, 14, 1049579,  https://doi.org/10.3389/fmicb.2023.1049579